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C

checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.sequence.func.And
 
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.sequence.func.ANode
 
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.sequence.func.BooleanFalseTerminal
 
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.sequence.func.BooleanTrueTerminal
 
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.sequence.func.CNode
 
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.sequence.func.Compositional
 
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.sequence.func.Correlational
 
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.sequence.func.GNode
 
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.sequence.func.IntegerTerminal
 
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.sequence.func.Not
 
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.sequence.func.Or
 
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.sequence.func.Position
 
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.sequence.func.PositionBased
 
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.sequence.func.ShiftTerminal1
 
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.sequence.func.ShiftTerminal2
 
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.sequence.func.ShiftTerminal3
 
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.sequence.func.StringNodeSize1
 
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.sequence.func.StringNodeSize2
 
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.sequence.func.StringNodeSize3
 
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.sequence.func.StringNodeSize4
 
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.sequence.func.StringNodeSize5
 
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.sequence.func.StringNodeSize6
 
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.sequence.func.StringNodeSize7
 
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.sequence.func.StringNodeSize8
 
checkConstraints(EvolutionState, int, GPIndividual, Parameter) - Method in class ec.app.sequence.func.TNode
 
cleanOnly - Variable in class ec.app.sequence.SequenceFeatureGenerator
 
cleanOnly - Variable in class ec.app.sequence.ThreadedSequenceFeatureInterpreter
 
cleanse() - Method in class ec.app.sequence.FTNode
 
close() - Static method in class ec.app.sequence.FileUtil
 
close - Variable in class ec.app.sequence.MotifData
 
close() - Method in class ec.app.sequence.ThreadedSequenceFeatureInterpreter
 
CNode - Class in ec.app.sequence.func
This represents the Cytosine Node for DNA sequences.
CNode() - Constructor for class ec.app.sequence.func.CNode
 
Compositional - Class in ec.app.sequence.func
This function or non-terminal is used for Compositional Based matching, i.e indepndent of position testing for compositions like AGGG anywhere in the sequence.
Compositional() - Constructor for class ec.app.sequence.func.Compositional
 
copyNode(FTNode, FTNode) - Method in class ec.app.sequence.FTNode
 
copyTo(GPData) - Method in class ec.app.sequence.MotifData
 
Correlational - Class in ec.app.sequence.func
This can be used for generating Explicit Correlational Features.
Correlational() - Constructor for class ec.app.sequence.func.Correlational
 
currentMotif - Variable in class ec.app.sequence.MotifData
 
currentMotifLength - Static variable in class ec.app.sequence.MotifData
 
currentPosition - Variable in class ec.app.sequence.MotifData
 
currentTerminal - Variable in class ec.app.sequence.MotifData
 

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