Package ec.app.sequence

Class Summary
ExonParser This is generic Utility to parse RNA sequences, with exons data given, to find the exact locations of Acceptors and Donors.
FastaFileChunker  
FastaParserGenome This Utility is used to extract Positive and Negative samples from Fasta files which have labels in properties.
FastaParserGenomeLabelGenerator  
FeatureCollector  
FeatureReader  
FeatureSorter  
FileUtil  
FTNode  
HallOfFame This is our simple implementation of Hall of Fame to capture good individuals from the run.
LibSvmToWekaFormatter  
MotifData This is the basic evolutionary data bucket sent across and each one puts his results in the bucket.
RNASequenceParser  
SequenceClassificationProblem Basic Fitness assessment code.
SequenceFeatureGenerator  
StatisticPluginForHallofFame This class is meant for getting plugin for HallOfFame.
SubpopulationExt This class extends Subpopulation and decreases the size of it every time by 25% for example.
ThreadedSequenceFeatureInterpreter This code is meant to read the Features stored in file (hall of fame output) and generate LibSVM specific format files.