ec.app.sequence
Class SequenceFeatureGenerator

java.lang.Object
  extended by ec.app.sequence.SequenceFeatureGenerator

public class SequenceFeatureGenerator
extends java.lang.Object


Field Summary
 boolean cleanOnly
           
static org.biojava.utils.regex.PatternFactory factory
           
 
Constructor Summary
SequenceFeatureGenerator()
           
 
Method Summary
 void generateLibSVMFile(java.io.File gpFile)
           
static void main(java.lang.String[] args)
           
 void setup(java.lang.String fileName)
          This method reads the sequences from File with labels +1, -1 and tries to put it in right buckets.
 
Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

cleanOnly

public boolean cleanOnly

factory

public static org.biojava.utils.regex.PatternFactory factory
Constructor Detail

SequenceFeatureGenerator

public SequenceFeatureGenerator()
Method Detail

generateLibSVMFile

public void generateLibSVMFile(java.io.File gpFile)
                        throws java.lang.Exception
Throws:
java.lang.Exception

setup

public void setup(java.lang.String fileName)
This method reads the sequences from File with labels +1, -1 and tries to put it in right buckets. It also initializes factor for IUPAC parsing etc

Parameters:
fileName -

main

public static void main(java.lang.String[] args)