Biophysical Journal
Biophysical Journal - Table of Contents - Volume 104 Issue 8, 16 April 2013
Generating Accurate Contact Maps of Transient Long-Range Interactions in Intrinsically Disordered Proteins by Paramagnetic Relaxation Enhancement
[Apr 2013]
G. Marius Clore.
Categories: Journal Articles
Where is that Noise Coming from?
[Apr 2013]
Edward W.J. Wallace.
Categories: Journal Articles
The Functional Heart of the M2 Channel
[Apr 2013]
Sebastian Hiller.
Categories: Journal Articles
Platelet-Rich Blood Clots
[Apr 2013]
Peter J. Hunter.
Categories: Journal Articles
Cell Cycle-Dependent Binding Modes of the Ran Exchange Factor RCC1 to Chromatin
[Apr 2013]
Martin Bierbaum, Philippe I.H. Bastiaens. The formation of an activity gradient of the small G-protein Ran around chromatin depends on the differential partitioning of the opposing enzyme activities of the Ran guanine nucleotide exchange ....
Categories: Journal Articles
Anomalous Diffusion of Single Particles in Cytoplasm
[Apr 2013]
Benjamin M. Regner, Dejan Vučinić, Cristina Domnisoru, Thomas M. Bartol, Martin W. Hetzer, Daniel M. Tartakovsky, Terrence J. Sejnowski. The crowded intracellular environment poses a formidable challenge to experimental and theoretical analyses of intracellular transport mechanisms. Our measurements of single-particle trajectories ....
Categories: Journal Articles
Low Frequency Entrainment of Oscillatory Bursts in Hair Cells
[Apr 2013]
Roie Shlomovitz, Lea Fredrickson-Hemsing, Albert Kao, Sebastiaan W.F. Meenderink, Robijn Bruinsma, Dolores Bozovic. Sensitivity of mechanical detection by the inner ear is dependent upon a highly nonlinear response to the applied stimulus. Here we show that a system of differential equations that support a subc....
Categories: Journal Articles
Improved Ligand Discrimination by Force-Induced Unbinding of the T Cell Receptor from Peptide-MHC
[Apr 2013]
Enrico Klotzsch, Gerhard J. Schütz. T cell activation is mediated via the recognition of peptides by the T cell receptor (TCR). This receptor ligand interaction is highly specific, and the TCR has to discriminate between a huge numb....
Categories: Journal Articles
Stoichiometric Relationship between Na+ Ions Transported and Glucose Consumed in Human Erythrocytes: Bayesian Analysis of 23Na and 13C NMR Time Course Data
[Apr 2013]
Max Puckeridge, Bogdan E. Chapman, Arthur D. Conigrave, Stuart M. Grieve, Gemma A. Figtree, Philip W. Kuchel. We examined the response of Na+,K+-ATPase (NKA) to monensin, a Na+ ionophore, with and without ouabain, an NKA inhibitor, in suspensions of human erythrocytes (red....
Categories: Journal Articles
Synchrony of Cardiomyocyte Ca2+ Release is Controlled by t-tubule Organization, SR Ca2+ Content, and Ryanodine Receptor Ca2+ Sensitivity
[Apr 2013]
Leiv Øyehaug, Kristian Ø. Loose, Guro F. Jølle, Åsmund T. Røe, Ivar Sjaastad, Geir Christensen, Ole M. Sejersted, William E. Louch. Recent work has demonstrated that cardiomyocyte Ca2+release is desynchronized in several pathological conditions. Loss of Ca2+ release synchrony has been attributed to t-tubu....
Categories: Journal Articles
pH-Dependent Conformation, Dynamics, and Aromatic Interaction of the Gating Tryptophan Residue of the Influenza M2 Proton Channel from Solid-State NMR
[Apr 2013]
Jonathan K. Williams, Yuan Zhang, Klaus Schmidt-Rohr, Mei Hong. The M2 protein of the influenza virus conducts protons into the virion under external acidic pH. The proton selectivity of the tetrameric channel is controlled by a single histidine (His37
Categories: Journal Articles
Actin Assembly Factors Regulate the Gelation Kinetics and Architecture of F-actin Networks
[Apr 2013]
Tobias T. Falzone, Patrick W. Oakes, Jennifer Sees, David R. Kovar, Margaret L. Gardel. Dynamic regulation of the actin cytoskeleton is required for diverse cellular processes. Proteins regulating the assembly kinetics of the cytoskeletal biopolymer F-actin are known to impact the ar....
Categories: Journal Articles
Cooperative Heparin-Mediated Oligomerization of Fibroblast Growth Factor-1 (FGF1) Precedes Recruitment of FGFR2 to Ternary Complexes
[Apr 2013]
Alan Brown, Christopher J. Robinson, John T. Gallagher, Tom L. Blundell. Fibroblast growth factors (FGFs) utilize cell surface heparan sulfate as a coreceptor in the assembly of signaling complexes with FGF-receptors on the plasma membrane. Here we undertake a complete....
Categories: Journal Articles
Substrate Dynamics in Enzyme Action: Rotations of Monosaccharide Subunits in the Binding Groove are Essential for Pectin Methylesterase Processivity
[Apr 2013]
Davide Mercadante, Laurence D. Melton, Geoffrey B. Jameson, Martin A.K. Williams, Alfonso De Simone. The dynamical behavior of biomacromolecules is a fundamental property regulating a large number of biological processes. Protein dynamics have been widely shown to play a role in enzyme catalysis;....
Categories: Journal Articles
Average Conformations Determined from PRE Data Provide High-Resolution Maps of Transient Tertiary Interactions in Disordered Proteins
[Apr 2013]
Jordi Silvestre-Ryan, Carlos W. Bertoncini, Robert Bryn Fenwick, Santiago Esteban-Martin, Xavier Salvatella. In the last decade it has become evident that disordered states of proteins play important physiological and pathological roles and that the transient tertiary interactions often present in these ....
Categories: Journal Articles
Modeling the Neuroprotective Role of Enhanced Astrocyte Mitochondrial Metabolism during Stroke
[Apr 2013]
Casey O. Diekman, Christopher P. Fall, James D. Lechleiter, David Terman. A mathematical model that integrates the dynamics of cell membrane potential, ion homeostasis, cell volume, mitochondrial ATP production, mitochondrial and endoplasmic reticulum Ca2+ ha....
Categories: Journal Articles
Platelet Motion near a Vessel Wall or Thrombus Surface in Two-Dimensional Whole Blood Simulations
[Apr 2013]
Tyler Skorczewski, Lindsay Crowl Erickson, Aaron L. Fogelson. Computational simulations using a two-dimensional lattice-Boltzmann immersed boundary method were conducted to investigate the motion of platelets near a vessel wall and close to an intravascular ....
Categories: Journal Articles
Regulating the Many to Benefit the Few: Role of Weak Small RNA Targets
[Apr 2013]
Daniel Jost, Andrzej Nowojewski, Erel Levine. Small regulatory RNAs are central players in the regulation of many cellular processes across all kingdoms of life. Experiments in mouse and human have shown that a typical small RNA may regulate ....
Categories: Journal Articles
Decomposing Noise in Biochemical Signaling Systems Highlights the Role of Protein Degradation
[Apr 2013]
Michał Komorowski, Jacek Miękisz, Michael P.H. Stumpf. Stochasticity is an essential aspect of biochemical processes at the cellular level. We now know that living cells take advantage of stochasticity in some cases and counteract stochastic effects i....
Categories: Journal Articles
Accumulation of Exogenous Activated TGF-β in the Superficial Zone of Articular Cartilage
[Apr 2013]
Michael B. Albro, Robert J. Nims, Alexander D. Cigan, Kevin J. Yeroushalmi, Tamara Alliston, Clark T. Hung, Gerard A. Ateshian. It was recently demonstrated that mechanical shearing of synovial fluid (SF), induced during joint motion, rapidly activates latent transforming growth factor β (TGF-β). This discove....
Categories: Journal Articles